Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs1240406 chr10:88764356 T/G 6.14E-5 166 25.87 23.77 21.1 KM Plot
UCEC rs12433521 chr14:77933451 T/C 1.61E-10 173 21.55 29.5 8.32 KM Plot
UCEC rs12435676 chr14:77902933 G/A 1.99E-10 173 21.3 29.5 8.32 KM Plot
UCEC rs12435869 chr14:73669537 A/G 4.61E-7 173 22.57 31.47 10.33 KM Plot
UCEC rs12435984 chr14:73697604 C/T 4.61E-7 174 22.57 27.05 10.33 KM Plot
UCEC rs12436077 chr14:73509110 C/G 4.61E-7 174 22.57 27.05 10.33 KM Plot
UCEC rs1261660 chr10:88765285 G/C 6.14E-5 166 25.87 23.77 21.1 KM Plot
UCEC rs12650250 chr4:57274743 T/A 0.000133 174 33.28 22.7 19.17 KM Plot
UCEC rs12652884 chr5:54479958 C/T 3.89E-7 174 21.6 25.27 18.47 KM Plot
UCEC rs12653221 chr5:54452855 T/G 9.18E-10 167 22.57 22.75 20.33 KM Plot
UCEC rs12657520 chr5:173054931 T/A 7.65E-6 171 22.63 17.3 11.53 KM Plot
UCEC rs12657959 chr5:54380840 G/A 3.06E-12 173 21.1 28.03 18.47 KM Plot
UCEC rs12660160 chr6:170732640 C/G 8.05E-5 166 21.6 24.68 13.63 KM Plot
UCEC rs12693214 chr2:180825685 G/A 0.000141 173 13.63 22.9 22.57 KM Plot
UCEC rs12693217 chr2:180841914 T/G 0.00013 173 13.63 23.33 22.57 KM Plot